PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30157.m000816
Common NameRCOM_1554430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 160aa    MW: 17740.3 Da    PI: 5.7499
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30157.m000816genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-05729123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++Cg +F++++   +H r H
  30157.m000816  7 HVCHKCGWPFPNPHPSAKHRRAH 29
                   79*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
HDNHGVHVCH KCGWPFPNPH PSAKHRRAHK KICGTIEGYK LVQSEGSTHS TMSEDEHQSD  60
EDHKTPSPQI LERSSNEKGS GAIGDRSGIS EDEVFADAVA EFPDSGSRKV IEESPEDVKK  120
LATFLASVAN NDTRTTLSYE DDAITDRGFK KMFNFNESMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575602.19e-98PREDICTED: uncharacterized protein LOC8270577 isoform X1
TrEMBLB9S3R61e-118B9S3R6_RICCO; Putative uncharacterized protein (Fragment)
STRINGPOPTR_0014s14320.18e-50(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50511719